PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0131s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 364aa    MW: 41561.2 Da    PI: 8.2914
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0131s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.44.7e-2454133286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W+++e++ Li++rre++  +++ k++k+lWe++s+kmr++gf rsp++C++kw+nl k++k+++ +++++      +++++++le
  Kaladp0131s0030.1.p  54 WSQDEIRSLINLRREVDGLFNTCKSNKHLWEQISAKMRKKGFDRSPNMCTDKWRNLLKEFKRVRCQDGGN-----GKMSWYKELE 133
                          ****************************************************************999984.....2456788886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.72246110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-547111IPR009057Homeodomain-like
SuperFamilySSF466892.53E-550140IPR009057Homeodomain-like
SMARTSM007179.5E-650112IPR001005SANT/Myb domain
CDDcd122033.69E-2652117No hitNo description
PfamPF138371.3E-1953135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYVSEKPRPT DVYKRVGRVM MVEPISVSPR MMTTGESSGE DHEMKAPKKR AETWSQDEIR  60
SLINLRREVD GLFNTCKSNK HLWEQISAKM RKKGFDRSPN MCTDKWRNLL KEFKRVRCQD  120
GGNGKMSWYK ELEELLRNRS SRHAAPAKVV DSYMHLDDKV VENDVITYGP AEGSRPAVNL  180
ETQLDHDGDA LPIPITPVDP VIANGVPPWS WRETPGTGEQ PLPYGGRVIS VKWGDYTRRI  240
GIDGSTEAIK EAIKSAFRLR SKRAFWLEDE HQIIRTLDRN MPLGNYTLYL DEGITIKICL  300
YGGADRIIIR TEEKTFYTEE HFHEYLSRRG LTGLSELNNG FRSIDALDDL RPGGAYQGVR  360
IID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A9e-4048131186DNA binding protein GT-1
2jmw_A1e-3948131186DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248872.11e-168PREDICTED: trihelix transcription factor GT-1-like
SwissprotQ9FX531e-148TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLF6HG421e-162F6HG42_VITVI; Putative uncharacterized protein
STRINGVIT_01s0010g02420.t011e-162(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-150Trihelix family protein